1. Introduction
Winmostar (TM) provides a graphical user interface that can efficiently manipulate quantum chemical calculations, first principles calculations, and molecular dynamics calculations. From the creation of the initial structure, from the calculation execution to the result analysis, you can carry out the one operation required for the simulation on Winmostar (TM).
1.1. About quotation
When announcing data created using Winmostar (TM) in academic presentations, articles, etc., please describe the Winmostar (TM) main body as follows, for example.
Winmostar V11, X-Ability Co. Ltd., Tokyo, Japan, 2024.
Please refer to the instructions of each software for the citation of solvers and various auxiliary programs called by Winmostar (TM).
1.2. Conventions in this manual
This manual follows the following conventions:
- Ctrl+A
Indicates keyboard key or key combination operation.
- OK
Labels, buttons, etc. Indicates a character string displayed on the GUI.
It shows the flow that follows menu, tab, etc. Above example means GUI flow from the menu basic in the opened window and find the label license code.
and click on the tab calledwmset.ini
,C\:winmos11\UserPref
Indicates file name or directory name.
- ls /usr/local/bin
Command prompt, command to be executed at terminal.
3.14159
Indicates input to the text box of the GUI.
Note
Indicates supplementary matter.
Warning
Indicates notes.
1.3. The libraries used
Winmostar uses the following libraries and softwares for some processings.
- OpenCubeGen
OpenCubegen Cube Generation for Gaussian, Gamess, and MOPAC packages Author Mitsuo Shoji mitsuo.shoji@apchem.nagoya-u.ac.jp Home page: http://www.geocities.jp/dr_mitsuos/index.html Copyright (c) All rights reserved. 2009- by Mitsuo Shoji- FermiSurfer
Copyright (c) 2014 Mitsuaki Kawamura Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.- Abbrevia 5.0
https://www.mozilla.org/en-US/MPL/1.1/- TeeChart Standard
=============================================== TeeChart Standard v2018 Copyright (c) 1995-2018 by Steema Software. All Rights Reserved. =============================================== SOFTWARE LICENSING CONTRACT NOTICE TO USER: THIS IS A CONTRACT. 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Steema Software www.steema.com ----------------------------------------------------------------------- Packmol 18.168
MIT License Copyright (c) 2009-2018 Leandro Martínez, José Mario Martínez, Ernesto Birgin Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.- libssh2 1.10.0
The BSD 3-Clause License Copyright (c) 2004-2007 Sara Golemon <sarag@libssh2.org> Copyright (c) 2005,2006 Mikhail Gusarov <dottedmag@dottedmag.net> Copyright (c) 2006-2007 The Written Word, Inc. Copyright (c) 2007 Eli Fant <elifantu@mail.ru> Copyright (c) 2009-2019 Daniel Stenberg Copyright (C) 2008, 2009 Simon Josefsson All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. Neither the name of the copyright holder nor the names of any other contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.- openssl 1.0.2m
OpenSSL License and Original SSLeay License OpenSSL License --------------- ==================================================================== Copyright (c) 1998-2018 The OpenSSL Project. All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 3. All advertising materials mentioning features or use of this software must display the following acknowledgment: "This product includes software developed by the OpenSSL Project for use in the OpenSSL Toolkit. (http://www.openssl.org/)" 4. 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The implementation was written so as to conform with Netscapes SSL. This library is free for commercial and non-commercial use as long as the following conditions are aheared to. The following conditions apply to all code found in this distribution, be it the RC4, RSA, lhash, DES, etc., code; not just the SSL code. The SSL documentation included with this distribution is covered by the same copyright terms except that the holder is Tim Hudson (tjh@cryptsoft.com). Copyright remains Eric Young's, and as such any Copyright notices in the code are not to be removed. If this package is used in a product, Eric Young should be given attribution as the author of the parts of the library used. This can be in the form of a textual message at program startup or in documentation (online or textual) provided with the package. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. 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The BSD 4-clause License and Mozilla Public License 1.1 Copyright (c) 2004-2009, Sara Golemon <sarag@libssh2.org> Copyright (c) 2009 by Daniel Stenberg Copyright (c) 2010 Simon Josefsson <simon@josefsson.org>} All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. Neither the name of the copyright holder nor the names of any other contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. Copyright (c) 2010, Zeljko Marjanovic <savethem4ever@gmail.com> This code is licensed under MPL 1.1 For details, see http://www.mozilla.org/MPL/MPL-1.1.html- Balloon
IMPORTANT: THIS SOFTWARE END USER LICENSE AGREEMENT (EULA) IS A LEGAL AGREEMENT BETWEEN THE LICENSEE (HEREINAFTER "YOU", EITHER AN INDIVIDUAL OR ANY OTHER LEGAL ENTITY) AND THE COPYRIGHT OWNER(S) OF THE BALLOON SOFTWARE (HEREINAFTER "SOFTWARE"). READ IT CAREFULLY BEFORE DOWNLOADING AND USING THE SOFTWARE. IT PROVIDES A LICENSE TO USE THE SOFTWARE AND CONTAINS WARRANTY INFORMATION AND LIABILITY DISCLAIMERS. BY DOWNLOADING AND/OR USING THE PROGRAM, YOU AGREE TO BECOME BOUND BY THE TERMS OF THIS AGREEMENT. IF YOU DO NOT AGREE TO BE BOUND BY THESE TERMS, THEN DO NOT DOWNLOAD OR USE THE SOFTWARE AND DELETE THE SOFTWARE FILES FROM YOUR COMPUTER SYSTEM. 1. Through any use of the Software You acknowledge your acceptance of the conditions of this license. 2. You acknowledge and agree that the Software is proprietary to the Copyright owner(s), and is protected under Finnish copyright law and international copyright treaties. You further acknowledge and agree that all right, title and interest in and to the Software, including all intellectual property rights, are and shall remain with the Copyright owner(s). 3. There is no fee for the use of the Software, which is provided to you "free of charge" as a public service. 4. As is common courtesy, you agree to acknowledge your use of the Software in any reports or publications that include any results obtained with the Software. 5. License Grants 1. The licensee is granted a non-exclusive license to use the Software in accordance with the terms of this EULA. 2. You may redistribute unmodified copies of the Software to third parties. The receiver of the Software will have same rights and responsibilities as if the Software would have been obtained directly from the original distribution site, i.e. the receiver is bound by the terms of this EULA. 6. License Restrictions 1. You may not alter, merge, modify, adapt or translate the Software, or decompile, reverse engineer, disassemble, or otherwise reduce the Software to a human-perceivable form. 2. You may not sell, rent, lease, or sublicense the Software. 3. You may not modify the Software or create derivative works based upon the Software. 7. License Termination In the event that you fail to comply with this EULA, the Copyright owner(s) may terminate the license. Upon any termination of this EULA, you shall immediately discontinue the use and destroy all copies of the Software. 8. Governing Law This EULA shall be governed by the laws of Sweden without reference to its conflict of law provisions. The court of Stockholm, Sweden, shall be the first instance forum for settlement of any disputes arising under this EULA. 9. WARRANTY DISCLAIMER THE COPYRIGHT OWNER(S) PROVIDE(S) NO TECHNICAL SUPPORT, WARRANTIES OR REMEDIES FOR THE SOFTWARE. THE PROGRAM IS PROVIDED "AS IS" AND MAY CONTAIN ERRORS ("BUGS"), BE BASED ON ERRONEOUS ASSUMPTIONS, OR HAVE OTHER DEFECTS, KNOWN AND UNKNOWN. CONSEQUENTLY, THERE IS NO WARRANTY WHATSOEVER FOR THE PROGRAM, WHETHER EXPRESSED OR IMPLIED, INCLUDING THE SUITABILITY OF THE PROGRAM FOR ANY PARTICULAR PURPOSE OR INFRINGEMENT; THUS YOU ACCEPT ALL RESPONSIBILITY WITH REGARD TO THE PERFORMANCE OF THE PROGRAM, THE RESULTS OBTAINED, AND THE USE AND INTERPRETATION OF SUCH RESULTS, AND ANY FUTURE CONSEQUENCES ARISING FROM YOUR USE OF THE PROGRAM OR RESULTS DERIVED THEREOF. 10. LIMITATION OF LIABILITY YOU AGREE NOT TO HOLD LIABLE FOR DAMAGES, IN ANY WAY, SHAPE OR FORM, ANY COPYRIGHT HOLDER OR OTHER PARTY HAVING THE RIGHT TO REDISTRIBUTE OR MODIFY THE PROGRAM. SUCH DAMAGES INCLUDE BUT ARE NOT LIMITED TO GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM, LOSS OF DATA, INACCURATE MODIFICATION OF DATA, OR ANY OTHER LOSSES INCURRED BY YOU OR BY A THIRD PARTY AS A RESULT OF THE USE OF THE PROGRAM OR INABILITY TO USE THE PROGRAM, OR INABILITY OF THE PROGRAM TO WORK TOGETHER WITH OTHER PROGRAMS. YOU AGREE THAT THE COPYRIGHT HOLDERS AND OTHER RESPONSIBLE PARTIES MAY HAVE KNOWLEDGE OF SUCH DEFECTS, INACCURACIES, LACK OF OPERATIONAL COMPATIBILITY WITH OTHER PROGRAMS, OR THE POSSIBILITY OF SUCH DAMAGES, AMONG OTHER DEFECTS, AND THAT YOU WILL NOT HOLD THESE PARTIES LIABLE FOR ANY DAMAGES RESULTING TO YOU OR TO A THIRD PARTY ARISING FROM YOUR USE OF THE PROGRAM. BALLOON Copyright © 2006-2018 Mikko Vainio. BALLOON Copyright © 2008-2014 J. Santeri Puranen. BALLOON Copyright © 2010 Visipoint Ltd. All rights reserved.- JSME
Copyright (c) 2017, Novartis Institutes for BioMedical Research Inc and Bruno Bienfait All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. * Neither the name of the Novartis Institutes for BioMedical Research nor the names of the authors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL COPYRIGHT HOLDERS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. JSME uses code from the following libraries: - Apache Harmony - Apache License v2.0 http://www.apache.org/licenses/ - gwt-mosaic - Apache License v2.0 http://www.apache.org/licenses/ - gwt-exporter - Apache License v2.0 http://www.apache.org/licenses/ - gwt - Apache License v2.0 http://www.apache.org/licenses/ - OpenChemLib - https://github.com/Actelion/openchemlib/blob/master/LICENSE - InChI 1.05 - http://www.inchi-trust.org/ - emscripten - https://kripken.github.io/emscripten-site/index.html- Spglib
BSD 3-Clause "New" or "Revised" License Copyright (c) 2014, Atsushi Togo All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. * Neither the name of the <organization> nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL <COPYRIGHT HOLDER> BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.- GEMMI
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