6.33. Winmostar Viewer¶
Winmostar Viewer is software attached to Winmostar specialized for drawing, displaying molecular orbital etc.
It is also possible to display only specific ingredients in a multicomponent system like MD.
6.33.1. How to use the mouse¶
| Left button + drag | Rotate the viewpoint.
As you drag and release the mouse button it will continue to rotate.
|
| Right button + up and down drag | Zoom In/Out. |
| Left button + right button + drag | It moves vertically and horizontally. |
6.33.2. Menu operation¶
6.33.2.1. File menu¶
- Open
- Read gld and MOLDA format files.
- Save GLD
- Save the currently open GLD format file with a name.
- Save MOLDA
- Save the structure displayed in the window in MOLDA format.
- Save JPEG
- Save the contents displayed in the window as a JPEG file.
- Save JPEG (Stereo)
- Save the left and right screens for stereoscopic viewing as a JPEG file.
- StereoPhoto Maker
- Start StereoPhotomaker.
- Exit
- Quit Winmsotar Viewer.
6.33.2.2. View menu¶
- Representations
- Perform detailed drawing adjustment Representations window is displayed.
- Perspective
- I use perspective.
- Background Color
Specify the color of the background.
- Winmostar Viewer
- Make the background color dark blue.
- Winmostar
- Make the background color the default background color of Winmostar.
- Black
- Make the background color black.
- White
- Set the background color to white.
- Model
Select the model to display.
- Ball-and-Stick Model
- Display the spherical bar model.
- Space-Filling Model
- Display space filling model.
- Stick Model
- Displays the bar model.
- Wire Model
- Display wire model.
- Show SPace-Filling Model Overlapping
- Display superimposed spatial priority models translucently.
- Show Animation Control Panel
- Animation operation panel is displayed.
- Copy Image
- Copy the image displayed in the window to the clipboard.
6.33.2.3. Help menu¶
- Help
- It shows how to use the mouse.
- About Winmostar Viewer
- Display version.
- Debug
- Displays debugging information such as memory usage.
6.33.3. Animation operation panel¶
When you display animation in Winmostar 3D, the UI for animation operation appears in the upper left corner of Winmostar 3D window.
- slider
- Move the frame.
- Once
- When playback reaches the last frame, playback stops.
- Loop
- When playback reaches the last frame, return to the first frame and repeat playback.
- Round
- Repeat playback in round trip.
- JPEG
- When playing with checked, the displayed contents are saved in JPEG format
- GIF
- When you play with the checked, the displayed contents are saved in GIF format
- Close
- Close this panel.
6.33.4. Representations window¶
- Orbit/Rotation
Specify the rotation method when rotating the viewpoint with left drag.
- Orbit
- Rotate freely.
- X, Y or Z
- Rotate around the horizontal direction within the window, the vertical direction within the screen, or the direction perpendicular to the screen.
- Periodic Boundary Condition
Specify how to display molecules that are outside the cell.
- None
- Display the original coordinates as they are.
- Atom
- It displays the structure so that it fits within the cell in atomic units.
- Mol
- Displays the structure so that the structure fits within the cell in molecule units.
- Molecule
- From the 1 in the middle of this window 9 is assigned to each molecule.
- Composition
- Assign 9 from 1 in the middle of this window to each molecular species (with the same molecular weight).
- 1 - 9
- The checked items are displayed. In the pull-down menu BS, SF, ST, WI are Ball-stick model (default), Space filling , Stick (rod) model, wire model.
- Rainbow
- It displays in different colors for each molecule.
- Gold
- The molecule is displayed in gold color.
- Stereo
- It displays stereoscopically.
- Enantiomer
- Display the original structure and its mirror image.
- Para
- Display in parallel method.
- Cross
- It displays by the intersection method.
- Anag
- It displays with anaglyph. (Red and blue glasses are used)
- Shift
- Specify the distance between molecules.
- red
- Specify the size of the molecule to rotate.
- H
- If checked, hydrogen atoms are displayed.
- Dummy
- When checked, dummy atoms are displayed.
- Backbone
- If checked, only the backbone will be displayed. (For proteins)
- Atom
- Sets the display magnification of atoms.
- Bond
- Sets the display magnification of the join.
- Z-Clip
- Specify the clipping position in the Z direction.
- Surface Style
Specify how to display isosurface such as molecular orbital.
- Mesh
- We display the isosurface in mesh (lattice) model.
- Solid
- Displays the isosurface in a solid model.
- SmoothSolid
- Display the isosurface in a smooth solid model.
- Trans
- Specify the transparency of the isosurface. (0: opaque, 1: transparent)
- X, Y, Z
- When mesh (scalar field) information such as molecular orbital is read, draw contour map (contour line) against the checked surface. The position of the contour map can be adjusted with the slider.