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Modeling Molecule

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Organic Molecule Movie Chemical Structure, 2D, SMILES, File import, 3D modeling, Benzene, Isooctane, Fluorene, Caffeine, Uric acid - -
Dimer Movie Benzene, Sandwich, Parallel, T-shaped - -
Metal Complex Movie Ferrocene, Zn(saloph), [Ru(bpy)3]2+ - -

Modeling Crystal

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Unit Cell Movie Anatase TiO2, Space Group, Supercell - -
Slab Model Movie Rutile TiO2, Miller indices - -
Adsorption Model Movie Pt, CO, ontop, fcc, hcp, bridge - -

MOPAC

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Basic Movie Propylene, Ionization potential (IP), Structure optimization, Molecular orbital (MO), IR spectrum, Zero point energy (ZPE), AM1 - -

CNDO/S

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Basic Movie Indigo, UV-Vis spectrum, Structure Optimization - -

GAMESS

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Basic Movie Propylene, Structure optimization, Molecular orbital (MO), Electrostatic potential, IR/Raman spectrum, Zero point energy (ZPE), Free energy, UV-Vis spectrum, B3LYP/6-31G*, TDDFT - -

Gaussian

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Basic - Propylene, Structure optimization, Molecular orbital (MO), Electrostatic potential, IR/Raman spectrum, Zero point energy (ZPE), Free energy, UV-Vis spectrum, B3LYP/6-31G*, TDDFT, NMR - -

NWChem

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Basic Movie Propylene, Structure optimization, Molecular orbital (MO), Electrostatic potential, IR/Raman spectrum, Zero point energy (ZPE), Free energy, UV-Vis spectrum, B3LYP/6-31G*, TDDFT, NMR - -

LAMMPS

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Basic Movie Tetrahydrofuran (THF), Liquid, Minimize, NVT, NPT, Potential energy, Temperature, Pressure, Density, GAFF, AM1-BCC, Radial distribution function (RDF), Mean square displacement (MSD), Diffusion coeficient, Specific heat, Compressibility, Animation - -
Automatic Force Field Editing Movie OPLS-AA, LiPF₆⁻, solid-wall, force field completion, adjustment of equilibrium bond lengths and angles - -
Electrolyte Systems Movie Propylene carbonate, lithium ion, LiBF4, multicomponent system, RESP charge, self-diffusion coefficient UPDATED - -
Systems with Solid Walls Movie Graphene, water, interface builder, heterogeneous nucleation, solid-liquid interface system, fixed solid wall, adsorption - -
Vapor Pressure
and Surface Tension
Movie Water, vapor-liquid interface, phase equilibrium, surface tension, vapor pressure, density distribution, vapor-liquid equilibrium density - -
Interfacial Tension Movie Water, benzene, liquid-liquid interface, interfacial tension, phase equilibrium, density distribution, interface builder, equilibrium density - -
Thermal Conductivity, Viscosity
and Dielectric Constant
Movie Water, liquid, automatic scaling of temperature and density, autocorrelation function, Green-Kubo formula, relaxation modulus UPDATED - -
Melting Point Movie Silicon, interface builder, Tersoff, solid-liquid interface system, phase equilibrium, NPH constant calculation - -
Glass Transition Temperature
(Polymer, Scan Calculation)
Movie Polypropylene, Dreiding, polymer melt, polymer builder, specific volume, glass transition temperature (Tg) - -
Glass Transition Temperature
(Polymer, Cooling Calculation)
Movie Polypropylene, Dreiding, polymer melt, polymer builder, specific volume, glass transition temperature (Tg), annealing - -
Polymer Elongation Movie Polyethylene, Dreiding, polymer melt, polymer builder, fracture, stress-strain curve, SS curve - -
Thermal Expansion Movie Silicon, crystal builder, Tersoff, annealing calculation, linear expansion coefficient - -
Linear Expansion Coefficient
(Solid)
Movie Aluminum, crystal builder, EAM, supercell, defect, stress-strain curve, SS curve - -
Dissipative Particle Dynamics Movie Diblock copolymer, DPD, morphology, scattering function, lamellar structure, coarse-grained - -
Kremer-Grest Model Movie Polymer, coarse-grained NEW - -

Gromacs

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Basic Movie Tetrahydrofuran (THF), Liquid, Minimize, NVT, NPT, Potential energy, Temperature, Pressure, Density, GAFF, AM1-BCC, Radial distribution function (RDF), Mean square displacement (MSD), Diffusion coeficient, Specific heat, Compressibility, Animation - -
Automatic Force Field Editing - OPLS-AA, LiPF₆⁻, solid-wall, force field completion, adjustment of equilibrium bond lengths and angles - -
Electrolyte Systems - Propylene carbonate, lithium ion, LiBF4, multicomponent system, RESP charge, self-diffusion coefficient - -
Vapor Pressure
and Surface Tension
- Water, vapor-liquid interface, phase equilibrium, surface tension, vapor pressure, density distribution, vapor-liquid equilibrium density UPDATED - -
Interfacial Tension - Water, benzene, liquid-liquid interface, interfacial tension, phase equilibrium, density distribution, interface builder, equilibrium density UPDATED - -
Viscosity
and Dielectric Constant
Movie Water, liquid, automatic scaling of temperature and density UPDATED - -
Solubility/Chi/DPD Parameters Movie Water, benzene, Hildebrand solubility parameter, SP value, χ parameter, DPD aij parameter, cohesive energy, heat of vaporization UPDATED - -
Solvation Free Energy
(ER method)
Movie Ethanol, water, hydration free energy, diluted solution, energy representation method, ERmod UPDATED - -
Solvation Free Energy
(BAR method)
Movie Ethanol, water, hydration free energy, diluted solution, Bennett acceptance ratio method - -
Glass Transition Temperature
(Polymer, Scan Calculation)
- Polypropylene, Dreiding, polymer melt, polymer builder, specific volume, glass transition temperature (Tg) - -
Protein Movie Lysozyme, PDB, hydrogen addition, solvent placement, ion addition, molecule fixation, RMSD UPDATED - -

Quantum ESPRESSO

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Basic Movie Silicon, Density of states (DOS), Projected density of states (PDOS), Band structure, Charge density, Self consistent calculation, DFT, PBE, Ultrasoft PP UPDATED - -
Structural Optimization Movie Rutile-type titanium dioxide, structural optimization, animation - -
Convergence Test Movie Si, cutoff energy, k-point mesh - -
Ferromagnetic Materials/
Antiferromagnetic Materials
Movie Fe, BCC, nickel oxide, NiO, rock salt structure, spin-polarized calculation, DFT+U, band structure, partial density of states, spin density - -
DFT+U/Equilibrium Potentials Movie Lithium cobalt oxide, LiCoO2, lithium-ion secondary battery, electrode, Hubbard U, total energy - -
Hybrid Functionals Movie Silicon, HSE06, hybrid functional, band gap - -
Van der Waals Corrections Movie Graphite, Grimme-D3, GGA, van der Waals forces, dispersion force - -
Löwdin Charges/Bader Charges Movie NaCl crystal, point charges, population analysis - -
Fermi Surface Movie Copper, FCC structure, Fermi surface, FermiSurfer - -
Surface Reconstruction Movie Si, structural optimization with partial constraints, slab model, (001) surface, asymmetric dimer structure - -
Work Function/Surface Energy Movie Pt, structural optimization, slab model, (111) surface, potential distribution, ESM method - -
Adsorption Energy Movie Pt, structural optimization, slab model, (111) surface, supercell, adsorption model, on-top site, carbon monoxide - -
Dielectric Function Movie Silicon, dielectric function, epsilon.x - -
NMR/EFG Movie Benzene, tetramethylsilane, GIPAW, electric-field gradient, quadrupole coupling constant, asymmetry parameter UPDATED - -
Phonon(DFPT Method) Movie Silicon, phonon calculation, ph.x, IR, Raman, dielectric constant, vibrations, phonon band structure, phonon density of states UPDATED - -
Phonon(Phonopy) Movie Silicon, phonon calculation, Phonopy, phonon band structure, phonon density of states, thermal properties UPDATED - -
Born-Oppenheimer MD Movie Methane molecule, BOMD, animation, energy, temperature control, self-diffusion coefficient - -
Nudged Elastic Band Method Movie Copper, slab model, surface adsorption model, structural optimization with partial constraints, NEB, transition state, surface diffusion UPDATED - -
Effective Screening Medium
(ESM) Method
Movie Aluminum, slab model, crystal builder, constant-N calculation, constant-mu calculation, Fermi energy UPDATED - -
ESM-RISM Method Movie Aluminum, slab model, THF, solvent file, VESTA UPDATED - -
Bulk Modulus Movie Si, automated calculation, volume variation, Birch-Murnaghan equation of state UPDATED - -
Defect Formation Energies Movie Diamond, semiconductor, automated calculation, point defects, charged defects NEW - -
BoltzTrap Movie Mg2Si, FCC, Seebeck coefficient, electrical conductivity, electronic thermal conductivity - -

FDMNES

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XANES spectra Movie Copper, DFT, XANES - -

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